bdgenomics.adam.models.ReferenceRegion

class bdgenomics.adam.models.ReferenceRegion(referenceName, start, end)

Represents a contiguous region of the reference genome.

__init__(referenceName, start, end)

Represents a contiguous region of the reference genome.

:param referenceName The name of the sequence (chromosome) in the reference genome :param start The 0-based residue-coordinate for the start of the region :param end The 0-based residue-coordinate for the first residue <i>after</i> the start which is <i>not</i> in the region – i.e. [start, end) define a 0-based half-open interval.

Methods

__init__(referenceName, start, end)

Represents a contiguous region of the reference genome.