Index

_

__init__() (bdgenomics.adam.adamContext.ADAMContext method) (bdgenomics.adam.ds.AlignmentDataset method) (bdgenomics.adam.ds.CoverageDataset method) (bdgenomics.adam.ds.FeatureDataset method) (bdgenomics.adam.ds.FragmentDataset method) (bdgenomics.adam.ds.GenomicDataset method) (bdgenomics.adam.ds.GenotypeDataset method) (bdgenomics.adam.ds.SequenceDataset method) (bdgenomics.adam.ds.SliceDataset method) (bdgenomics.adam.ds.VCFSupportingGenomicDataset method) (bdgenomics.adam.ds.VariantContextDataset method) (bdgenomics.adam.ds.VariantDataset method) (bdgenomics.adam.models.ReferenceRegion method)

A

ADAMContext (class in bdgenomics.adam.adamContext)

AlignmentDataset (class in bdgenomics.adam.ds)

B

bdgenomics.adam (module) bdgenomics.adam.adamContext (module)

bdgenomics.adam.ds (module) bdgenomics.adam.models (module) bdgenomics.adam.stringency (module)

C

CoverageDataset (class in bdgenomics.adam.ds)

F

FeatureDataset (class in bdgenomics.adam.ds)

FragmentDataset (class in bdgenomics.adam.ds)

G

GenomicDataset (class in bdgenomics.adam.ds)

GenotypeDataset (class in bdgenomics.adam.ds)

L

LENIENT (in module bdgenomics.adam.stringency)

R

ReferenceRegion (class in bdgenomics.adam.models)

S

SequenceDataset (class in bdgenomics.adam.ds) SILENT (in module bdgenomics.adam.stringency)

SliceDataset (class in bdgenomics.adam.ds) STRICT (in module bdgenomics.adam.stringency)

V

VariantContextDataset (class in bdgenomics.adam.ds)

VariantDataset (class in bdgenomics.adam.ds) VCFSupportingGenomicDataset (class in bdgenomics.adam.ds)